Stochastic voyages into uncharted chemical space produce a representative library of all possible drug-like compounds.

نویسندگان

  • Aaron M Virshup
  • Julia Contreras-García
  • Peter Wipf
  • Weitao Yang
  • David N Beratan
چکیده

The "small molecule universe" (SMU), the set of all synthetically feasible organic molecules of 500 Da molecular weight or less, is estimated to contain over 10(60) structures, making exhaustive searches for structures of interest impractical. Here, we describe the construction of a "representative universal library" spanning the SMU that samples the full extent of feasible small molecule chemistries. This library was generated using the newly developed Algorithm for Chemical Space Exploration with Stochastic Search (ACSESS). ACSESS makes two important contributions to chemical space exploration: it allows the systematic search of the unexplored regions of the small molecule universe, and it facilitates the mining of chemical libraries that do not yet exist, providing a near-infinite source of diverse novel compounds.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Assessment of "drug-likeness" of a small library of natural products using chemoinformatics

Even though natural products has an excellent record as a source for new drugs, the advent of ultrahigh-throughput screening and large-scale combinatorial synthetic methods, has caused a decline in the use of natural products research in the pharmaceutical industry. This is due to the efficiency in generating and screening a high number of synthetic combinatorial compounds; whereas traditional ...

متن کامل

Assessment of "drug-likeness" of a small library of natural products using chemoinformatics

Even though natural products has an excellent record as a source for new drugs, the advent of ultrahigh-throughput screening and large-scale combinatorial synthetic methods, has caused a decline in the use of natural products research in the pharmaceutical industry. This is due to the efficiency in generating and screening a high number of synthetic combinatorial compounds; whereas traditional ...

متن کامل

Virtual Exploration of the Chemical Universe up to 11 Atoms of C, N, O, F: Assembly of 26.4 Million Structures (110.9 Million Stereoisomers) and Analysis for New Ring Systems, Stereochemistry, Physicochemical Properties, Compound Classes, and Drug Discovery

All molecules of up to 11 atoms of C, N, O, and F possible under consideration of simple valency, chemical stability, and synthetic feasibility rules were generated and collected in a database (GDB). GDB contains 26.4 million molecules (110.9 million stereoisomers), including three- and four-membered rings and triple bonds. By comparison, only 63 857 compounds of up to 11 atoms were found in pu...

متن کامل

To my dear parents ii

REMLINGER, KATJA S. Statistical Design and Analysis of High Throughput Screening Data Using Pooling Experiments and Data Mining Techniques. (Under the direction of Dr. Jacqueline M. Hughes-Oliver and Dr. S. Stanley Young.) Discovery of a new drug involves screening large chemical libraries to identify new and diverse active compounds. Only a very small percentage of the compounds in the library...

متن کامل

Molecular Generation with Recurrent Neural Networks (RNNs)

The potential number of drug like small molecules is estimated to be between 1023 and 1060 while current databases of known compounds are orders of magnitude smaller with approximately 108 compounds. This discrepancy has led to an interest in generating virtual libraries using hand crafted chemical rules and fragment based methods to cover a larger area of chemical space and generate chemical l...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Journal of the American Chemical Society

دوره 135 19  شماره 

صفحات  -

تاریخ انتشار 2013